Proteomics software for Mac OSX

[Doug]

Hi all,

I am curious is anyone knows of any open source proteomics software for Mac OSX. I know several search algorithms (like OMSSA) are linux/OSX compatible. But what about tools for dta generation, peptide FDR filtering, protein grouping and FDR, quantitation, and PTM localization? Technically TPP works on Mac OSX but the installation procedures are pretty extensive.

Are there any other options out there?

[achimt]

OpenMS/TOPP is another interesting option.

http://open-ms.sourceforge.net/openms/

Achim

Hi all,

I am curious is anyone knows of any open source proteomics software for Mac OSX. I know several search algorithms (like OMSSA) are linux/OSX compatible. But what about tools for dta generation, peptide FDR filtering, protein grouping and FDR, quantitation, and PTM localization? Technically TPP works on Mac OSX but the installation procedures are pretty extensive.

Are there any other options out there?

[Doug]

Wow, that looks really nice. I'm downloading it now to take a closer look. Thanks.

[daniswan]

I met one of the developers of OpenMS/TOPP about a year ago and was impressed with the platform. I downloaded it, but found it very confusing to use and gave up. Does anyone have experience using the platform? Or Doug, if you get it working, please let us know how you like it.