Motif site analysis?

[Kambiz]

Hi everybody

I was wondering is there any software around which you can analysis the proteome for different motif site such as p-site etc.?

[Doug]

Motif-x can be used to find motifs de novo from sets of modified peptides. (http://motif-x.med.harvard.edu/)

Or th Group-based prediction system can find known motifs in your data set. (http://gps.biocuckoo.org/)

[Kambiz]

thanks ...

[aky]

IceLogo tool is also very helpful. It is available from google code repository here.

[Kambiz]

Dear Aky
I tried to access IceLogo. However, even I have gmail account, I can not enter the google code site. Can you tell me why?

[aky]

Hi Kambiz,

This is strange. When you go to the site, you should be seeing a page like the image I have attached. You can download it by clicking on the Download arrow button(circled in the image).icelogo.png

I think you must be doing this already. If you cannot see the page, contact your system admin. Maybe he will know the reason.

-Amit

[Craig]

Google Code is blocked in Iran. But the exact same file is available for download here.

[Kambiz]

ٌWell it does not work . As Craig said it si blocked for Iran. Even the site Craig suggested is blocked ...

I hope these stupied politician can be quit very soon. I think it should be a must for a politician to do science before he or she can get a political position ... It think than the world would be much more safer place to be ...

Thanks anyway ...