ive spent ages develping methods to quantitate phosphopeptides and normal peptide expression.
i am comparing a cell line with or without a drug treatment. now that i have 100s of peptide quants does
anyone know of a free way to make sense of the biological meaning of the data
ideally i would like to paste a list of accession numbers and their quant values and a magical piece of software would tell me protein function, known phospo site etc. ive tried reactome which is quite good but not really for phospo sites. it seems that getting the data is only half the battle !!!!